No. words: 1064; after pruning: 1038


Histogram of relative pair offsets, for read pairs with multiple alignments:
44     2
46     2
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 4.6 (1,1:588)  294  1.54 0.62 0.00  KSU043_A08_BE443500Ld09P009D02D081F2_064.ab1        7   331 (0)  C KSU044_A08_BE443500Ld09P009D02D081R2_064.ab1   (149)   584   258 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  148 nodes

 76 str. conn. components

Path
    1  C KSU044_A08_BE443500Ld09P009D02D081R2_064.ab1   733 
  165    KSU043_A08_BE443500Ld09P009D02D081F2_064.ab1    22 
  169  C KSU044_A08_BE443500Ld09P009D02D081R2_064.ab1   565 
Contig length: old 733, new 733

Contig length: old 733, new 733
New start: 0 
S Change at: 198; seg lengths: entry 1, contig 1