No. words: 1436; after pruning: 1410


Histogram of relative pair offsets, for read pairs with multiple alignments:
44     2
46     2
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.4 (1,1:576)  555  0.17 0.00 0.17  KSU043_B08_BE443500Ld10P009D02D081F2_062.ab1        1   577 (121)  C KSU044_B08_BE443500Ld10P009D02D081R2_062.ab1   (162)   576     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C KSU044_B08_BE443500Ld10P009D02D081R2_062.ab1   738 
  174    KSU043_B08_BE443500Ld10P009D02D081F2_062.ab1    12 
  247  C KSU044_B08_BE443500Ld10P009D02D081R2_062.ab1   492 
  255    KSU043_B08_BE443500Ld10P009D02D081F2_062.ab1    93 
  263  C KSU044_B08_BE443500Ld10P009D02D081R2_062.ab1   476 
  495    KSU043_B08_BE443500Ld10P009D02D081F2_062.ab1   333 
  563  C KSU044_B08_BE443500Ld10P009D02D081R2_062.ab1   176 
  615    KSU043_B08_BE443500Ld10P009D02D081F2_062.ab1   453 
  659  C KSU044_B08_BE443500Ld10P009D02D081R2_062.ab1    80 
  667    KSU043_B08_BE443500Ld10P009D02D081F2_062.ab1   505 
  671  C KSU044_B08_BE443500Ld10P009D02D081R2_062.ab1    68 
  679    KSU043_B08_BE443500Ld10P009D02D081F2_062.ab1   517 
  683  C KSU044_B08_BE443500Ld10P009D02D081R2_062.ab1    56 
  687    KSU043_B08_BE443500Ld10P009D02D081F2_062.ab1   525 
  695  C KSU044_B08_BE443500Ld10P009D02D081R2_062.ab1    44 
  707    KSU043_B08_BE443500Ld10P009D02D081F2_062.ab1   545 
Contig length: old 859, new 860

Contig length: old 860, new 860
New start: 0