No. words: 1479; after pruning: 1439


Histogram of relative pair offsets, for read pairs with multiple alignments:
44     2
46     2
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 4.6 (1,1:580)  552  0.17 0.00 0.17  KSU043_D08_BE443500Ld12P009D02D081F2_058.ab1        8   581 (175)  C KSU044_D08_BE443500Ld12P009D02D081R2_058.ab1   (150)   573     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C KSU044_D08_BE443500Ld12P009D02D081R2_058.ab1   723 
  158    KSU043_D08_BE443500Ld12P009D02D081F2_058.ab1    15 
  186  C KSU044_D08_BE443500Ld12P009D02D081R2_058.ab1   538 
  190    KSU043_D08_BE443500Ld12P009D02D081F2_058.ab1    47 
  202  C KSU044_D08_BE443500Ld12P009D02D081R2_058.ab1   522 
  242    KSU043_D08_BE443500Ld12P009D02D081F2_058.ab1    99 
  246  C KSU044_D08_BE443500Ld12P009D02D081R2_058.ab1   478 
  602    KSU043_D08_BE443500Ld12P009D02D081F2_058.ab1   459 
Contig length: old 898, new 899

Contig length: old 899, new 899
New start: 0 
S Change at: 154; seg lengths: entry 1, contig 1
S Change at: 774; seg lengths: entry 1, contig 1