No. words: 1490; after pruning: 1464


Histogram of relative pair offsets, for read pairs with multiple alignments:
44     2
46     2
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.3 (1,1:589)  554  0.34 0.51 0.17  KSU043_E08_BE443500Ld13P009D02D081F2_056.ab1        1   590 (169)  C KSU044_E08_BE443500Ld13P009D02D081R2_056.ab1   (139)   592     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C KSU044_E08_BE443500Ld13P009D02D081R2_056.ab1   731 
  160    KSU043_E08_BE443500Ld13P009D02D081F2_056.ab1    19 
  205  C KSU044_E08_BE443500Ld13P009D02D081R2_056.ab1   526 
  241    KSU043_E08_BE443500Ld13P009D02D081F2_056.ab1   100 
  249  C KSU044_E08_BE443500Ld13P009D02D081R2_056.ab1   482 
  481    KSU043_E08_BE443500Ld13P009D02D081F2_056.ab1   340 
  641  C KSU044_E08_BE443500Ld13P009D02D081R2_056.ab1    90 
  661    KSU043_E08_BE443500Ld13P009D02D081F2_056.ab1   520 
  681  C KSU044_E08_BE443500Ld13P009D02D081R2_056.ab1    50 
  689    KSU043_E08_BE443500Ld13P009D02D081F2_056.ab1   548 
Contig length: old 900, new 900

Contig length: old 900, new 900
New start: 0 
S Change at: 156; seg lengths: entry 1, contig 1