No. words: 1470; after pruning: 1444


Histogram of relative pair offsets, for read pairs with multiple alignments:
44     2
46     2
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.9 (1,1:580)  555  0.17 0.00 0.17  KSU043_G08_BE443500Ld15P009D02D081F2_052.ab1        5   581 (136)  C KSU044_G08_BE443500Ld15P009D02D081R2_052.ab1   (177)   576     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C KSU044_G08_BE443500Ld15P009D02D081R2_052.ab1   753 
  189    KSU043_G08_BE443500Ld15P009D02D081F2_052.ab1    16 
  217  C KSU044_G08_BE443500Ld15P009D02D081R2_052.ab1   537 
  221    KSU043_G08_BE443500Ld15P009D02D081F2_052.ab1    48 
  234  C KSU044_G08_BE443500Ld15P009D02D081R2_052.ab1   520 
  270    KSU043_G08_BE443500Ld15P009D02D081F2_052.ab1    97 
  278  C KSU044_G08_BE443500Ld15P009D02D081R2_052.ab1   476 
  454    KSU043_G08_BE443500Ld15P009D02D081F2_052.ab1   281 
  594  C KSU044_G08_BE443500Ld15P009D02D081R2_052.ab1   160 
  602    KSU043_G08_BE443500Ld15P009D02D081F2_052.ab1   429 
  622  C KSU044_G08_BE443500Ld15P009D02D081R2_052.ab1   132 
  630    KSU043_G08_BE443500Ld15P009D02D081F2_052.ab1   457 
  638  C KSU044_G08_BE443500Ld15P009D02D081R2_052.ab1   116 
  694    KSU043_G08_BE443500Ld15P009D02D081F2_052.ab1   521 
  706  C KSU044_G08_BE443500Ld15P009D02D081R2_052.ab1    48 
  722    KSU043_G08_BE443500Ld15P009D02D081F2_052.ab1   549 
  740  C KSU044_G08_BE443500Ld15P009D02D081R2_052.ab1    15 
  744    KSU043_G08_BE443500Ld15P009D02D081F2_052.ab1   571 
Contig length: old 889, new 890

Contig length: old 890, new 890
New start: 0