No. words: 1297; after pruning: 1258


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:29)  402  0.00 0.00 0.24  KSU008_D12_BE443537As02P009E02E081F1_094.ab1       29   437 (0)    KSU050_E08_BE443537As02P009E02E081F2_056.ab1        1   408 (14) *
Merge:(0)    3    0.0 6.4 (2,1:403)  394  0.00 0.00 0.25  KSU008_D12_BE443537As02P009E02E081F1_094.ab1        1   401 (36)  C KSU051_E08_BE443537As02P009E02E081F2_056.ab1   (35)   403     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 3       1        0

Offset
  0       2 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  574 nodes

 114 str. conn. components

Path
    1  C KSU051_E08_BE443537As02P009E02E081F2_056.ab1   438 
   71    KSU008_D12_BE443537As02P009E02E081F1_094.ab1    36 
   75  C KSU051_E08_BE443537As02P009E02E081F2_056.ab1   364 
  175    KSU050_E08_BE443537As02P009E02E081F2_056.ab1   111 
  179  C KSU051_E08_BE443537As02P009E02E081F2_056.ab1   260 
  183    KSU050_E08_BE443537As02P009E02E081F2_056.ab1   119 
  215  C KSU051_E08_BE443537As02P009E02E081F2_056.ab1   224 
  275    KSU050_E08_BE443537As02P009E02E081F2_056.ab1   211 
Contig length: old 485, new 486

Contig length: old 486, new 486
New start: 0