No. words: 1104; after pruning: 1078


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.5 (1,1:384)  365  0.00 0.52 0.52  KSU022_A07_BE443537Ld01P009E02E081F1_063.ab1        1   385 (181)  C KSU023_A07_BE443537Ld01P009E02E081R1_063.ab1   (152)   386     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C KSU023_A07_BE443537Ld01P009E02E081R1_063.ab1   538 
  381    KSU022_A07_BE443537Ld01P009E02E081F1_063.ab1   227 
Contig length: old 719, new 720

Contig length: old 720, new 720
New start: 0