No. words: 709; after pruning: 683


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.4 (1,1:374)  289  0.00 0.00 0.00  KSU022_B07_BE443537Ld02P009E02E081F1_061.ab1        1   290 (0)  C KSU023_B07_BE443537Ld02P009E02E081R1_061.ab1   (44)   375    86 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  146 nodes

 75 str. conn. components

Path
    1  C KSU023_B07_BE443537Ld02P009E02E081R1_061.ab1   419 
   48    KSU022_B07_BE443537Ld02P009E02E081F1_061.ab1     4 
  116  C KSU023_B07_BE443537Ld02P009E02E081R1_061.ab1   304 
  120    KSU022_B07_BE443537Ld02P009E02E081F1_061.ab1    76 
  124  C KSU023_B07_BE443537Ld02P009E02E081R1_061.ab1   296 
  128    KSU022_B07_BE443537Ld02P009E02E081F1_061.ab1    84 
  136  C KSU023_B07_BE443537Ld02P009E02E081R1_061.ab1   284 
  144    KSU022_B07_BE443537Ld02P009E02E081F1_061.ab1   100 
  184  C KSU023_B07_BE443537Ld02P009E02E081R1_061.ab1   236 
Contig length: old 419, new 419

Contig length: old 419, new 419
New start: 0