No. words: 1010; after pruning: 984


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 5.8 (1,1:389)  376  0.00 0.26 0.26  KSU022_C07_BE443537Ld03P009E02E081F1_059.ab1        1   387 (54)  C KSU023_C07_BE443537Ld03P009E02E081R1_059.ab1   (179)   390     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C KSU023_C07_BE443537Ld03P009E02E081R1_059.ab1   569 
  230    KSU022_C07_BE443537Ld03P009E02E081F1_059.ab1    50 
  242  C KSU023_C07_BE443537Ld03P009E02E081R1_059.ab1   328 
  258    KSU022_C07_BE443537Ld03P009E02E081F1_059.ab1    78 
  270  C KSU023_C07_BE443537Ld03P009E02E081R1_059.ab1   300 
  406    KSU022_C07_BE443537Ld03P009E02E081F1_059.ab1   226 
  442  C KSU023_C07_BE443537Ld03P009E02E081R1_059.ab1   128 
  490    KSU022_C07_BE443537Ld03P009E02E081F1_059.ab1   310 
  502  C KSU023_C07_BE443537Ld03P009E02E081R1_059.ab1    68 
  518    KSU022_C07_BE443537Ld03P009E02E081F1_059.ab1   338 
  522  C KSU023_C07_BE443537Ld03P009E02E081R1_059.ab1    48 
  530    KSU022_C07_BE443537Ld03P009E02E081F1_059.ab1   350 
Contig length: old 620, new 621

Contig length: old 621, new 621
New start: 0