No. words: 567; after pruning: 541


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.9 (1,1:388)  175  0.00 0.00 0.00  KSU022_D08_BE443537Ld12P009E02E081F1_058.ab1      154   331 (0)  C KSU023_D08_BE443537Ld12P009E02E081R1_058.ab1   (0)   236    59 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  86 nodes

 45 str. conn. components

Path
    1    KSU022_D08_BE443537Ld12P009E02E081F1_058.ab1     1 
  205  C KSU023_D08_BE443537Ld12P009E02E081R1_058.ab1   185 
  225    KSU022_D08_BE443537Ld12P009E02E081F1_058.ab1   225 
  233  C KSU023_D08_BE443537Ld12P009E02E081R1_058.ab1   157 
Contig length: old 389, new 389

Contig length: old 389, new 389
New start: 0