No. words: 1651; after pruning: 1625


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 1.7 (1,1:174)  151  3.45 0.00 0.00  KSU050_F02_BE443565Tu02P009F02F081F1_006.ab1        1   174 (699)  C KSU051_F02_BE443565Tu02P009F02F081R1_006.ab1   (603)   175     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  74 nodes

 39 str. conn. components

Path
    1  C KSU051_F02_BE443565Tu02P009F02F081R1_006.ab1   778 
  615    KSU050_F02_BE443565Tu02P009F02F081F1_006.ab1    12 
  619  C KSU051_F02_BE443565Tu02P009F02F081R1_006.ab1   160 
  647    KSU050_F02_BE443565Tu02P009F02F081F1_006.ab1    44 
  703  C KSU051_F02_BE443565Tu02P009F02F081R1_006.ab1    76 
  711    KSU050_F02_BE443565Tu02P009F02F081F1_006.ab1   108 
  723  C KSU051_F02_BE443565Tu02P009F02F081R1_006.ab1    56 
  727    KSU050_F02_BE443565Tu02P009F02F081F1_006.ab1   124 
  746  C KSU051_F02_BE443565Tu02P009F02F081R1_006.ab1    33 
  754    KSU050_F02_BE443565Tu02P009F02F081F1_006.ab1   151 
  758  C KSU051_F02_BE443565Tu02P009F02F081R1_006.ab1    21 
  762    KSU050_F02_BE443565Tu02P009F02F081F1_006.ab1   159 
Contig length: old 1476, new 1476

Contig length: old 1476, new 1476
New start: 0