No. words: 1597; after pruning: 1557


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:1103)  461  0.61 0.41 0.20  KSU006_C06_BE444561As01P009G02G081F1_038.ab1      276   767 (0)  C KSU007_C06_BE444561As01P009G02G081R1_038.ab1   (0)   830   338 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1    KSU006_C06_BE444561As01P009G02G081F1_038.ab1     1 
  407  C KSU007_C06_BE444561As01P009G02G081R1_038.ab1   699 
  411    KSU006_C06_BE444561As01P009G02G081F1_038.ab1   411 
  463  C KSU007_C06_BE444561As01P009G02G081R1_038.ab1   643 
  467    KSU006_C06_BE444561As01P009G02G081F1_038.ab1   467 
  499  C KSU007_C06_BE444561As01P009G02G081R1_038.ab1   607 
  503    KSU006_C06_BE444561As01P009G02G081F1_038.ab1   503 
  519  C KSU007_C06_BE444561As01P009G02G081R1_038.ab1   587 
  523    KSU006_C06_BE444561As01P009G02G081F1_038.ab1   523 
  531  C KSU007_C06_BE444561As01P009G02G081R1_038.ab1   575 
  535    KSU006_C06_BE444561As01P009G02G081F1_038.ab1   535 
  539  C KSU007_C06_BE444561As01P009G02G081R1_038.ab1   567 
Contig length: old 1104, new 1105

Contig length: old 1105, new 1105
New start: 0