No. words: 1106; after pruning: 1080


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 0.7 (1,1:1056)   40  0.00 0.00 0.00  KSU022_B11_BE444561Ld02P009G02G081F1_093.ab1      340   385 (0)  C KSU023_B11_BE444561Ld02P009G02G081R1_093.ab1   (3)   718   673 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  24 nodes

 14 str. conn. components

Path
    1    KSU022_B11_BE444561Ld02P009G02G081F1_093.ab1     1 
  379  C KSU023_B11_BE444561Ld02P009G02G081R1_093.ab1   679 
Contig length: old 1057, new 1057

Contig length: old 1057, new 1057
New start: 0