No. words: 2538; after pruning: 2486


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 11.4 (1,1:-4)  551  0.00 0.00 0.00  KSU008_G12_BE444811As02P009H02H081F1_088.ab1        5   565 (0)    KSU050_H08_BE444811As02P009H02H081F2_050.ab1        9   569 (94) *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    
Merge:(0)    3   -0.1 -0.1 (1,1:14)  447  9.77 0.00 0.16  KSU009_G12_BE444811As02P009H02H081R1_088.ab1       18   662 (0)    KSU051_H08_BE444811As02P009H02H081F2_050.ab1        5   648 (0) *

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.1       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2
    2    1

Chimera merges: 


Contig 2:  170 nodes

 87 str. conn. components

Path
    1    KSU009_G12_BE444811As02P009H02H081R1_088.ab1     1 
   48    KSU051_H08_BE444811As02P009H02H081F2_050.ab1    34 
   72    KSU009_G12_BE444811As02P009H02H081R1_088.ab1    72 
   76    KSU051_H08_BE444811As02P009H02H081F2_050.ab1    62 
   84    KSU009_G12_BE444811As02P009H02H081R1_088.ab1    84 
   95    KSU051_H08_BE444811As02P009H02H081F2_050.ab1    81 
  114    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   114 
  140    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   126 
  144    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   144 
  208    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   194 
  221    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   221 
  270    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   256 
  282    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   282 
  290    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   276 
  327    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   327 
  331    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   317 
  335    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   335 
  348    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   334 
  367    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   367 
  459    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   445 
  489    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   489 
  493    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   479 
  523    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   523 
  547    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   533 
  569    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   569 
  573    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   559 
  585    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   585 
  611    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   597 
  619    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   619 
  628    KSU051_H08_BE444811As02P009H02H081F2_050.ab1   614 
  642    KSU009_G12_BE444811As02P009H02H081R1_088.ab1   642 
Contig length: old 662, new 662

Contig 1:  282 nodes

 143 str. conn. components

Path
    1    KSU050_H08_BE444811As02P009H02H081F2_050.ab1     1 
   20    KSU008_G12_BE444811As02P009H02H081F1_088.ab1    16 
   32    KSU050_H08_BE444811As02P009H02H081F2_050.ab1    32 
   36    KSU008_G12_BE444811As02P009H02H081F1_088.ab1    32 
   40    KSU050_H08_BE444811As02P009H02H081F2_050.ab1    40 
   52    KSU008_G12_BE444811As02P009H02H081F1_088.ab1    48 
   60    KSU050_H08_BE444811As02P009H02H081F2_050.ab1    60 
  112    KSU008_G12_BE444811As02P009H02H081F1_088.ab1   108 
  120    KSU050_H08_BE444811As02P009H02H081F2_050.ab1   120 
  552    KSU008_G12_BE444811As02P009H02H081F1_088.ab1   548 
  556    KSU050_H08_BE444811As02P009H02H081F2_050.ab1   556 
Contig length: old 663, new 663

Contig length: old 662, new 662
New start: 0 
S Change at: 134; seg lengths: entry 3, contig 3
S Change at: 195; seg lengths: entry 1, contig 1
S Change at: 255; seg lengths: entry 2, contig 2
S Change at: 303; seg lengths: entry 1, contig 1
S Change at: 357; seg lengths: entry 3, contig 3
S Change at: 447; seg lengths: entry 1, contig 1
S Change at: 589; seg lengths: entry 1, contig 1
S Change at: 599; seg lengths: entry 1, contig 1
S Change at: 623; seg lengths: entry 2, contig 2

Contig length: old 663, new 663
New start: 0