No. words: 1367; after pruning: 1341


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.4 (1,1:659)  644  0.00 0.15 0.00  KSU008_H07_BE444811At01P009H02H081F1_060.ab1        1   657 (28)  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1   (21)   661     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1   682 
   52    KSU008_H07_BE444811At01P009H02H081F1_060.ab1    30 
   76  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1   607 
   80    KSU008_H07_BE444811At01P009H02H081F1_060.ab1    58 
   96  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1   587 
  112    KSU008_H07_BE444811At01P009H02H081F1_060.ab1    90 
  148  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1   535 
  152    KSU008_H07_BE444811At01P009H02H081F1_060.ab1   130 
  172  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1   511 
  196    KSU008_H07_BE444811At01P009H02H081F1_060.ab1   174 
  320  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1   363 
  336    KSU008_H07_BE444811At01P009H02H081F1_060.ab1   314 
  348  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1   335 
  352    KSU008_H07_BE444811At01P009H02H081F1_060.ab1   330 
  356  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1   327 
  516    KSU008_H07_BE444811At01P009H02H081F1_060.ab1   494 
  520  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1   163 
  548    KSU008_H07_BE444811At01P009H02H081F1_060.ab1   526 
  552  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1   131 
  584    KSU008_H07_BE444811At01P009H02H081F1_060.ab1   562 
  588  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1    95 
  592    KSU008_H07_BE444811At01P009H02H081F1_060.ab1   570 
  596  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1    87 
  656    KSU008_H07_BE444811At01P009H02H081F1_060.ab1   634 
  664  C KSU009_H07_BE444811At01P009H02H081R1_060.ab1    19 
  672    KSU008_H07_BE444811At01P009H02H081F1_060.ab1   650 
Contig length: old 707, new 707

Contig length: old 707, new 707
New start: 0