No. words: 1386; after pruning: 1360


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   12    0.0 11.9 (1,1:681)  650  0.00 0.00 0.00  KSU008_B04_BE444811At02P009H02H081F1_029.ab1       12   670 (22)  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   (23)   671    13 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
12       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   694 
   51    KSU008_B04_BE444811At02P009H02H081F1_029.ab1    39 
   87  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   608 
   99    KSU008_B04_BE444811At02P009H02H081F1_029.ab1    87 
  103  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   592 
  107    KSU008_B04_BE444811At02P009H02H081F1_029.ab1    95 
  147  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   548 
  151    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   139 
  167  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   528 
  171    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   159 
  179  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   516 
  187    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   175 
  191  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   504 
  195    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   183 
  223  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   472 
  231    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   219 
  255  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   440 
  259    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   247 
  267  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   428 
  279    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   267 
  303  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   392 
  315    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   303 
  363  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   332 
  375    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   363 
  379  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   316 
  407    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   395 
  447  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   248 
  455    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   443 
  467  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   228 
  475    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   463 
  483  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   212 
  495    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   483 
  503  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   192 
  523    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   511 
  527  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   168 
  543    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   531 
  547  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   148 
  575    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   563 
  583  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1   112 
  595    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   583 
  599  C KSU009_B04_BE444811At02P009H02H081R1_029.ab1    96 
  675    KSU008_B04_BE444811At02P009H02H081F1_029.ab1   663 
Contig length: old 704, new 704

Contig length: old 704, new 704
New start: 0