No. words: 1285; after pruning: 1259


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.0 (1,1:635)  469  0.20 0.00 0.41  KSU039_A01_BE444811Ld01P009H02H081F2_015.ab1        4   494 (0)  C KSU039_A07_BE444811Ld01P009H02H081R2_063.ab1   (159)   632   144 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C KSU039_A07_BE444811Ld01P009H02H081R2_063.ab1   791 
  183    KSU039_A01_BE444811Ld01P009H02H081F2_015.ab1    27 
  203  C KSU039_A07_BE444811Ld01P009H02H081R2_063.ab1   589 
  207    KSU039_A01_BE444811Ld01P009H02H081F2_015.ab1    51 
  215  C KSU039_A07_BE444811Ld01P009H02H081R2_063.ab1   577 
  227    KSU039_A01_BE444811Ld01P009H02H081F2_015.ab1    71 
  239  C KSU039_A07_BE444811Ld01P009H02H081R2_063.ab1   553 
  243    KSU039_A01_BE444811Ld01P009H02H081F2_015.ab1    87 
  251  C KSU039_A07_BE444811Ld01P009H02H081R2_063.ab1   541 
  275    KSU039_A01_BE444811Ld01P009H02H081F2_015.ab1   119 
  283  C KSU039_A07_BE444811Ld01P009H02H081R2_063.ab1   509 
  287    KSU039_A01_BE444811Ld01P009H02H081F2_015.ab1   131 
  303  C KSU039_A07_BE444811Ld01P009H02H081R2_063.ab1   489 
  339    KSU039_A01_BE444811Ld01P009H02H081F2_015.ab1   183 
  347  C KSU039_A07_BE444811Ld01P009H02H081R2_063.ab1   445 
Contig length: old 791, new 791

Contig length: old 791, new 791
New start: 0