No. words: 1404; after pruning: 1378


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.3 (1,1:643)  615  0.47 0.00 0.31  KSU039_B01_BE444811Ld02P009H02H081F2_013.ab1        3   645 (48)  C KSU039_B07_BE444811Ld02P009H02H081R2_061.ab1   (70)   641     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C KSU039_B07_BE444811Ld02P009H02H081R2_061.ab1   711 
   74    KSU039_B01_BE444811Ld02P009H02H081F2_013.ab1     6 
   78  C KSU039_B07_BE444811Ld02P009H02H081R2_061.ab1   634 
   94    KSU039_B01_BE444811Ld02P009H02H081F2_013.ab1    26 
  174  C KSU039_B07_BE444811Ld02P009H02H081R2_061.ab1   538 
  178    KSU039_B01_BE444811Ld02P009H02H081F2_013.ab1   110 
  342  C KSU039_B07_BE444811Ld02P009H02H081R2_061.ab1   370 
  346    KSU039_B01_BE444811Ld02P009H02H081F2_013.ab1   278 
  350  C KSU039_B07_BE444811Ld02P009H02H081R2_061.ab1   362 
  358    KSU039_B01_BE444811Ld02P009H02H081F2_013.ab1   290 
  362  C KSU039_B07_BE444811Ld02P009H02H081R2_061.ab1   350 
  366    KSU039_B01_BE444811Ld02P009H02H081F2_013.ab1   298 
  374  C KSU039_B07_BE444811Ld02P009H02H081R2_061.ab1   338 
  378    KSU039_B01_BE444811Ld02P009H02H081F2_013.ab1   310 
  386  C KSU039_B07_BE444811Ld02P009H02H081R2_061.ab1   326 
  394    KSU039_B01_BE444811Ld02P009H02H081F2_013.ab1   326 
  402  C KSU039_B07_BE444811Ld02P009H02H081R2_061.ab1   310 
  430    KSU039_B01_BE444811Ld02P009H02H081F2_013.ab1   362 
  434  C KSU039_B07_BE444811Ld02P009H02H081R2_061.ab1   278 
  695    KSU039_B01_BE444811Ld02P009H02H081F2_013.ab1   628 
Contig length: old 760, new 760

Contig length: old 760, new 760
New start: 0 
I Change at: 677; seg lengths: entry 1, contig 0
D Change at: 702; seg lengths: entry 0, contig 1
S Change at: 709; seg lengths: entry 1, contig 1