No. words: 1090; after pruning: 1064


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:644)  421  1.12 0.00 0.00  KSU039_C01_BE444811Ld03P009H02H081F2_011.ab1      155   599 (0)  C KSU039_C07_BE444811Ld03P009H02H081R2_059.ab1   (0)   491    47 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1    KSU039_C01_BE444811Ld03P009H02H081F2_011.ab1     1 
  339  C KSU039_C07_BE444811Ld03P009H02H081R2_059.ab1   307 
  355    KSU039_C01_BE444811Ld03P009H02H081F2_011.ab1   355 
  371  C KSU039_C07_BE444811Ld03P009H02H081R2_059.ab1   275 
  375    KSU039_C01_BE444811Ld03P009H02H081F2_011.ab1   375 
  379  C KSU039_C07_BE444811Ld03P009H02H081R2_059.ab1   267 
  383    KSU039_C01_BE444811Ld03P009H02H081F2_011.ab1   383 
  387  C KSU039_C07_BE444811Ld03P009H02H081R2_059.ab1   259 
  395    KSU039_C01_BE444811Ld03P009H02H081F2_011.ab1   395 
  399  C KSU039_C07_BE444811Ld03P009H02H081R2_059.ab1   247 
Contig length: old 645, new 645

Contig length: old 645, new 645
New start: 0