No. words: 1275; after pruning: 1249


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.1 (1,1:644)  520  0.56 0.00 0.00  KSU039_E01_BE444811Ld05P009H02H081F2_007.ab1        3   540 (3)  C KSU039_E07_BE444811Ld05P009H02H081R2_055.ab1   (89)   643   106 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C KSU039_E07_BE444811Ld05P009H02H081R2_055.ab1   732 
   93    KSU039_E01_BE444811Ld05P009H02H081F2_007.ab1     6 
  201  C KSU039_E07_BE444811Ld05P009H02H081R2_055.ab1   532 
  205    KSU039_E01_BE444811Ld05P009H02H081F2_007.ab1   118 
  337  C KSU039_E07_BE444811Ld05P009H02H081R2_055.ab1   396 
  345    KSU039_E01_BE444811Ld05P009H02H081F2_007.ab1   258 
  349  C KSU039_E07_BE444811Ld05P009H02H081R2_055.ab1   384 
  357    KSU039_E01_BE444811Ld05P009H02H081F2_007.ab1   270 
  369  C KSU039_E07_BE444811Ld05P009H02H081R2_055.ab1   364 
  401    KSU039_E01_BE444811Ld05P009H02H081F2_007.ab1   314 
  409  C KSU039_E07_BE444811Ld05P009H02H081R2_055.ab1   324 
  413    KSU039_E01_BE444811Ld05P009H02H081F2_007.ab1   326 
  417  C KSU039_E07_BE444811Ld05P009H02H081R2_055.ab1   316 
Contig length: old 732, new 732

Contig length: old 732, new 732
New start: 0