No. words: 1087; after pruning: 1061


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.8 (1,1:647)  360  0.53 0.00 0.27  KSU039_F01_BE444811Ld06P009H02H081F2_005.ab1      273   649 (62)  C KSU039_F07_BE444811Ld06P009H02H081R2_053.ab1   (0)   376     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  182 nodes

 93 str. conn. components

Path
    1    KSU039_F01_BE444811Ld06P009H02H081F2_005.ab1     1 
  371  C KSU039_F07_BE444811Ld06P009H02H081R2_053.ab1   278 
  375    KSU039_F01_BE444811Ld06P009H02H081F2_005.ab1   375 
  431  C KSU039_F07_BE444811Ld06P009H02H081R2_053.ab1   218 
  439    KSU039_F01_BE444811Ld06P009H02H081F2_005.ab1   439 
  443  C KSU039_F07_BE444811Ld06P009H02H081R2_053.ab1   206 
  463    KSU039_F01_BE444811Ld06P009H02H081F2_005.ab1   463 
  467  C KSU039_F07_BE444811Ld06P009H02H081R2_053.ab1   182 
  631    KSU039_F01_BE444811Ld06P009H02H081F2_005.ab1   631 
  635  C KSU039_F07_BE444811Ld06P009H02H081R2_053.ab1    14 
  643    KSU039_F01_BE444811Ld06P009H02H081F2_005.ab1   644 
Contig length: old 711, new 710

Contig length: old 710, new 710
New start: 0