No. words: 1054; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.3 (1,1:648)  352  2.98 0.50 0.00  KSU039_G01_BE444811Ld07P009H02H081F2_003.ab1      157   559 (0)  C KSU039_G07_BE444811Ld07P009H02H081R2_051.ab1   (0)   495    91 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1    KSU039_G01_BE444811Ld07P009H02H081F2_003.ab1     1 
  358  C KSU039_G07_BE444811Ld07P009H02H081R2_051.ab1   292 
  362    KSU039_G01_BE444811Ld07P009H02H081F2_003.ab1   362 
  370  C KSU039_G07_BE444811Ld07P009H02H081R2_051.ab1   280 
  382    KSU039_G01_BE444811Ld07P009H02H081F2_003.ab1   382 
  386  C KSU039_G07_BE444811Ld07P009H02H081R2_051.ab1   264 
  398    KSU039_G01_BE444811Ld07P009H02H081F2_003.ab1   398 
  402  C KSU039_G07_BE444811Ld07P009H02H081R2_051.ab1   248 
  406    KSU039_G01_BE444811Ld07P009H02H081F2_003.ab1   406 
  410  C KSU039_G07_BE444811Ld07P009H02H081R2_051.ab1   240 
Contig length: old 649, new 649

Contig length: old 649, new 649
New start: 0