No. words: 976; after pruning: 950


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.4 (1,1:647)  237  0.00 0.00 0.80  KSU039_A02_BE444811Ld09P009H02H081F2_016.ab1      400   650 (77)  C KSU039_A08_BE444811Ld09P009H02H081R2_064.ab1   (0)   249     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  122 nodes

 63 str. conn. components

Path
    1    KSU039_A02_BE444811Ld09P009H02H081F2_016.ab1     1 
  503  C KSU039_A08_BE444811Ld09P009H02H081R2_064.ab1   146 
  507    KSU039_A02_BE444811Ld09P009H02H081F2_016.ab1   507 
  531  C KSU039_A08_BE444811Ld09P009H02H081R2_064.ab1   118 
  535    KSU039_A02_BE444811Ld09P009H02H081F2_016.ab1   535 
  539  C KSU039_A08_BE444811Ld09P009H02H081R2_064.ab1   110 
  543    KSU039_A02_BE444811Ld09P009H02H081F2_016.ab1   543 
  547  C KSU039_A08_BE444811Ld09P009H02H081R2_064.ab1   102 
  551    KSU039_A02_BE444811Ld09P009H02H081F2_016.ab1   551 
  555  C KSU039_A08_BE444811Ld09P009H02H081R2_064.ab1    94 
  567    KSU039_A02_BE444811Ld09P009H02H081F2_016.ab1   567 
  575  C KSU039_A08_BE444811Ld09P009H02H081R2_064.ab1    74 
  583    KSU039_A02_BE444811Ld09P009H02H081F2_016.ab1   583 
  587  C KSU039_A08_BE444811Ld09P009H02H081R2_064.ab1    62 
  611    KSU039_A02_BE444811Ld09P009H02H081F2_016.ab1   611 
  619  C KSU039_A08_BE444811Ld09P009H02H081R2_064.ab1    31 
  631    KSU039_A02_BE444811Ld09P009H02H081F2_016.ab1   631 
  635  C KSU039_A08_BE444811Ld09P009H02H081R2_064.ab1    15 
  644    KSU039_A02_BE444811Ld09P009H02H081F2_016.ab1   645 
Contig length: old 727, new 726

Contig length: old 726, new 726
New start: 0