No. words: 867; after pruning: 841


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.5 (1,1:628)  208  0.46 0.46 0.00  KSU039_B02_BE444811Ld10P009H02H081F2_014.ab1        1   217 (0)  C KSU039_B08_BE444811Ld10P009H02H081R2_062.ab1   (20)   630   413 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1  C KSU039_B08_BE444811Ld10P009H02H081R2_062.ab1   650 
   24    KSU039_B02_BE444811Ld10P009H02H081F2_014.ab1     4 
  118  C KSU039_B08_BE444811Ld10P009H02H081R2_062.ab1   532 
  138    KSU039_B02_BE444811Ld10P009H02H081F2_014.ab1   118 
  142  C KSU039_B08_BE444811Ld10P009H02H081R2_062.ab1   508 
  146    KSU039_B02_BE444811Ld10P009H02H081F2_014.ab1   126 
  162  C KSU039_B08_BE444811Ld10P009H02H081R2_062.ab1   488 
  198    KSU039_B02_BE444811Ld10P009H02H081F2_014.ab1   178 
  202  C KSU039_B08_BE444811Ld10P009H02H081R2_062.ab1   448 
Contig length: old 650, new 649

Contig length: old 649, new 649
New start: 0