No. words: 1574; after pruning: 1548


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.4 (1,1:647)  626  0.00 0.00 0.31  KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1        5   649 (141)  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   (141)   643     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   784 
  161    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1    24 
  165  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   620 
  169    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1    32 
  185  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   600 
  205    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1    68 
  221  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   564 
  225    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1    88 
  245  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   540 
  257    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   120 
  293  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   492 
  297    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   160 
  301  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   484 
  309    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   172 
  317  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   468 
  329    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   192 
  353  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   432 
  357    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   220 
  369  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   416 
  393    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   256 
  469  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   316 
  529    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   392 
  537  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   248 
  625    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   488 
  629  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   156 
  665    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   528 
  669  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   116 
  677    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   540 
  681  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1   104 
  689    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   552 
  693  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1    92 
  745    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   608 
  755  C KSU039_H08_BE444811Ld16P009H02H081R2_050.ab1    31 
  767    KSU039_H02_BE444811Ld16P009H02H081F2_002.ab1   630 
Contig length: old 926, new 927

Contig length: old 927, new 927
New start: 0