No. words: 670; after pruning: 644


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.0 (1,1:318)  179  0.00 0.00 0.00  KSU039_C04_BE446061Ld11P009A03A091F2_028.ab1        1   180 (0)  C KSU039_C10_BE446061Ld11P009A03A091R2_076.ab1   (171)   319   140 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  92 nodes

 48 str. conn. components

Path
    1  C KSU039_C10_BE446061Ld11P009A03A091R2_076.ab1   490 
Contig length: old 490, new 490

Contig length: old 490, new 490
New start: 0