No. words: 1069; after pruning: 1043


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:495)  483  0.00 0.00 0.00  KSU002_A02_BE446161At01P006E02E081F1_005.ab1        1   496 (39)  C KSU003_A02_BE446161At01P006E02E081R1_005.ab1   (38)   496     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C KSU003_A02_BE446161At01P006E02E081R1_005.ab1   534 
  170    KSU002_A02_BE446161At01P006E02E081F1_005.ab1   132 
  174  C KSU003_A02_BE446161At01P006E02E081R1_005.ab1   361 
  270    KSU002_A02_BE446161At01P006E02E081F1_005.ab1   232 
  274  C KSU003_A02_BE446161At01P006E02E081R1_005.ab1   261 
  426    KSU002_A02_BE446161At01P006E02E081F1_005.ab1   388 
  430  C KSU003_A02_BE446161At01P006E02E081R1_005.ab1   105 
  434    KSU002_A02_BE446161At01P006E02E081F1_005.ab1   396 
  446  C KSU003_A02_BE446161At01P006E02E081R1_005.ab1    89 
  450    KSU002_A02_BE446161At01P006E02E081F1_005.ab1   412 
  478  C KSU003_A02_BE446161At01P006E02E081R1_005.ab1    57 
  494    KSU002_A02_BE446161At01P006E02E081F1_005.ab1   456 
Contig length: old 573, new 573

Contig length: old 573, new 573
New start: 0