No. words: 1101; after pruning: 1075


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:537)  518  0.00 0.00 0.19  KSU002_H09_BE446161At02P006E02E081F1_076.ab1        1   538 (22)  C KSU003_H09_BE446161At02P006E02E081R1_076.ab1   (4)   537     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C KSU003_H09_BE446161At02P006E02E081R1_076.ab1   541 
  153    KSU002_H09_BE446161At02P006E02E081F1_076.ab1   149 
  161  C KSU003_H09_BE446161At02P006E02E081R1_076.ab1   381 
  285    KSU002_H09_BE446161At02P006E02E081F1_076.ab1   281 
  289  C KSU003_H09_BE446161At02P006E02E081R1_076.ab1   253 
  397    KSU002_H09_BE446161At02P006E02E081F1_076.ab1   393 
  401  C KSU003_H09_BE446161At02P006E02E081R1_076.ab1   141 
  425    KSU002_H09_BE446161At02P006E02E081F1_076.ab1   421 
  437  C KSU003_H09_BE446161At02P006E02E081R1_076.ab1   105 
  445    KSU002_H09_BE446161At02P006E02E081F1_076.ab1   441 
  461  C KSU003_H09_BE446161At02P006E02E081R1_076.ab1    81 
  465    KSU002_H09_BE446161At02P006E02E081F1_076.ab1   461 
  469  C KSU003_H09_BE446161At02P006E02E081R1_076.ab1    73 
  493    KSU002_H09_BE446161At02P006E02E081F1_076.ab1   489 
  501  C KSU003_H09_BE446161At02P006E02E081R1_076.ab1    41 
  509    KSU002_H09_BE446161At02P006E02E081F1_076.ab1   505 
Contig length: old 563, new 564

Contig length: old 564, new 564
New start: 0