No. words: 1261; after pruning: 1235


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.4 (1,1:501)  483  0.00 0.20 0.00  KSU045_D01_BE446161Ld06P006E02E081F2_009.ab1        1   501 (131)  C KSU046_D01_BE446161Ld06P006E02E081R2_009.ab1   (126)   503     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C KSU046_D01_BE446161Ld06P006E02E081R2_009.ab1   629 
  496    KSU045_D01_BE446161Ld06P006E02E081F2_009.ab1   369 
  500  C KSU046_D01_BE446161Ld06P006E02E081R2_009.ab1   130 
  504    KSU045_D01_BE446161Ld06P006E02E081F2_009.ab1   377 
  512  C KSU046_D01_BE446161Ld06P006E02E081R2_009.ab1   118 
  524    KSU045_D01_BE446161Ld06P006E02E081F2_009.ab1   397 
  532  C KSU046_D01_BE446161Ld06P006E02E081R2_009.ab1    98 
  556    KSU045_D01_BE446161Ld06P006E02E081F2_009.ab1   429 
  584  C KSU046_D01_BE446161Ld06P006E02E081R2_009.ab1    46 
  592    KSU045_D01_BE446161Ld06P006E02E081F2_009.ab1   465 
Contig length: old 759, new 759

Contig length: old 759, new 759
New start: 0