No. words: 1303; after pruning: 1277


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.1 (1,1:500)  482  0.00 0.20 0.00  KSU045_E01_BE446161Ld07P006E02E081F2_007.ab1        1   500 (132)  C KSU046_E01_BE446161Ld07P006E02E081R2_007.ab1   (169)   502     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C KSU046_E01_BE446161Ld07P006E02E081R2_007.ab1   671 
  539    KSU045_E01_BE446161Ld07P006E02E081F2_007.ab1   369 
  543  C KSU046_E01_BE446161Ld07P006E02E081R2_007.ab1   129 
  547    KSU045_E01_BE446161Ld07P006E02E081F2_007.ab1   377 
  555  C KSU046_E01_BE446161Ld07P006E02E081R2_007.ab1   117 
  567    KSU045_E01_BE446161Ld07P006E02E081F2_007.ab1   397 
  575  C KSU046_E01_BE446161Ld07P006E02E081R2_007.ab1    97 
  587    KSU045_E01_BE446161Ld07P006E02E081F2_007.ab1   417 
  627  C KSU046_E01_BE446161Ld07P006E02E081R2_007.ab1    45 
  635    KSU045_E01_BE446161Ld07P006E02E081F2_007.ab1   465 
Contig length: old 802, new 802

Contig length: old 802, new 802
New start: 0