No. words: 1304; after pruning: 1278


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.3 (1,1:499)  479  0.00 0.20 0.00  KSU045_F01_BE446161Ld08P006E02E081F2_005.ab1        1   497 (134)  C KSU046_F01_BE446161Ld08P006E02E081R2_005.ab1   (172)   501     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C KSU046_F01_BE446161Ld08P006E02E081R2_005.ab1   673 
  541    KSU045_F01_BE446161Ld08P006E02E081F2_005.ab1   368 
  545  C KSU046_F01_BE446161Ld08P006E02E081R2_005.ab1   129 
  549    KSU045_F01_BE446161Ld08P006E02E081F2_005.ab1   376 
  557  C KSU046_F01_BE446161Ld08P006E02E081R2_005.ab1   117 
  569    KSU045_F01_BE446161Ld08P006E02E081F2_005.ab1   396 
  577  C KSU046_F01_BE446161Ld08P006E02E081R2_005.ab1    97 
  589    KSU045_F01_BE446161Ld08P006E02E081F2_005.ab1   416 
  633  C KSU046_F01_BE446161Ld08P006E02E081R2_005.ab1    41 
  637    KSU045_F01_BE446161Ld08P006E02E081F2_005.ab1   464 
Contig length: old 804, new 804

Contig length: old 804, new 804
New start: 0