No. words: 1306; after pruning: 1280


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:501)  488  0.00 0.00 0.00  KSU045_G01_BE446161Ld09P006E02E081F2_003.ab1        1   502 (131)  C KSU046_G01_BE446161Ld09P006E02E081R2_003.ab1   (171)   502     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C KSU046_G01_BE446161Ld09P006E02E081R2_003.ab1   673 
  551    KSU045_G01_BE446161Ld09P006E02E081F2_003.ab1   380 
  555  C KSU046_G01_BE446161Ld09P006E02E081R2_003.ab1   119 
  571    KSU045_G01_BE446161Ld09P006E02E081F2_003.ab1   400 
  575  C KSU046_G01_BE446161Ld09P006E02E081R2_003.ab1    99 
  611    KSU045_G01_BE446161Ld09P006E02E081F2_003.ab1   440 
  635  C KSU046_G01_BE446161Ld09P006E02E081R2_003.ab1    39 
  639    KSU045_G01_BE446161Ld09P006E02E081F2_003.ab1   468 
Contig length: old 804, new 804

Contig length: old 804, new 804
New start: 0