No. words: 1248; after pruning: 1222


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.5 (1,1:490)  475  0.00 0.00 0.00  KSU045_H01_BE446161Ld11P006E02E081F2_001.ab1        1   488 (131)  C KSU046_H01_BE446161Ld11P006E02E081R2_001.ab1   (138)   491     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C KSU046_H01_BE446161Ld11P006E02E081R2_001.ab1   629 
  498    KSU045_H01_BE446161Ld11P006E02E081F2_001.ab1   360 
  502  C KSU046_H01_BE446161Ld11P006E02E081R2_001.ab1   128 
  506    KSU045_H01_BE446161Ld11P006E02E081F2_001.ab1   368 
  510  C KSU046_H01_BE446161Ld11P006E02E081R2_001.ab1   120 
  526    KSU045_H01_BE446161Ld11P006E02E081F2_001.ab1   388 
  530  C KSU046_H01_BE446161Ld11P006E02E081R2_001.ab1   100 
  542    KSU045_H01_BE446161Ld11P006E02E081F2_001.ab1   404 
  562  C KSU046_H01_BE446161Ld11P006E02E081R2_001.ab1    68 
  566    KSU045_H01_BE446161Ld11P006E02E081F2_001.ab1   428 
  582  C KSU046_H01_BE446161Ld11P006E02E081R2_001.ab1    48 
  594    KSU045_H01_BE446161Ld11P006E02E081F2_001.ab1   456 
Contig length: old 757, new 757

Contig length: old 757, new 757
New start: 0