No. words: 1303; after pruning: 1277


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.9 (1,1:500)  477  0.40 0.20 0.00  KSU045_B02_BE446161Ld13P006E02E081F2_014.ab1        1   500 (132)  C KSU046_B02_BE446161Ld13P006E02E081R2_014.ab1   (169)   502     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C KSU046_B02_BE446161Ld13P006E02E081R2_014.ab1   671 
  310    KSU045_B02_BE446161Ld13P006E02E081F2_014.ab1   140 
  314  C KSU046_B02_BE446161Ld13P006E02E081R2_014.ab1   358 
  542    KSU045_B02_BE446161Ld13P006E02E081F2_014.ab1   372 
  546  C KSU046_B02_BE446161Ld13P006E02E081R2_014.ab1   126 
  550    KSU045_B02_BE446161Ld13P006E02E081F2_014.ab1   380 
  554  C KSU046_B02_BE446161Ld13P006E02E081R2_014.ab1   118 
  566    KSU045_B02_BE446161Ld13P006E02E081F2_014.ab1   396 
  574  C KSU046_B02_BE446161Ld13P006E02E081R2_014.ab1    98 
  590    KSU045_B02_BE446161Ld13P006E02E081F2_014.ab1   420 
  606  C KSU046_B02_BE446161Ld13P006E02E081R2_014.ab1    66 
  610    KSU045_B02_BE446161Ld13P006E02E081F2_014.ab1   440 
  622  C KSU046_B02_BE446161Ld13P006E02E081R2_014.ab1    50 
  634    KSU045_B02_BE446161Ld13P006E02E081F2_014.ab1   464 
Contig length: old 802, new 802

Contig length: old 802, new 802
New start: 0