No. words: 1259; after pruning: 1233


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.8 (1,1:501)  483  0.00 0.20 0.00  KSU045_D02_BE446161Ld15P006E02E081F2_010.ab1        1   501 (130)  C KSU046_D02_BE446161Ld15P006E02E081R2_010.ab1   (125)   503     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C KSU046_D02_BE446161Ld15P006E02E081R2_010.ab1   628 
  255    KSU045_D02_BE446161Ld15P006E02E081F2_010.ab1   129 
  259  C KSU046_D02_BE446161Ld15P006E02E081R2_010.ab1   370 
  267    KSU045_D02_BE446161Ld15P006E02E081F2_010.ab1   141 
  271  C KSU046_D02_BE446161Ld15P006E02E081R2_010.ab1   358 
  279    KSU045_D02_BE446161Ld15P006E02E081F2_010.ab1   153 
  283  C KSU046_D02_BE446161Ld15P006E02E081R2_010.ab1   346 
  295    KSU045_D02_BE446161Ld15P006E02E081F2_010.ab1   169 
  303  C KSU046_D02_BE446161Ld15P006E02E081R2_010.ab1   326 
  503    KSU045_D02_BE446161Ld15P006E02E081F2_010.ab1   377 
  511  C KSU046_D02_BE446161Ld15P006E02E081R2_010.ab1   118 
  523    KSU045_D02_BE446161Ld15P006E02E081F2_010.ab1   397 
  531  C KSU046_D02_BE446161Ld15P006E02E081R2_010.ab1    98 
  543    KSU045_D02_BE446161Ld15P006E02E081F2_010.ab1   417 
  555  C KSU046_D02_BE446161Ld15P006E02E081R2_010.ab1    74 
  563    KSU045_D02_BE446161Ld15P006E02E081F2_010.ab1   437 
  583  C KSU046_D02_BE446161Ld15P006E02E081R2_010.ab1    46 
  591    KSU045_D02_BE446161Ld15P006E02E081F2_010.ab1   465 
Contig length: old 757, new 757

Contig length: old 757, new 757
New start: 0