No. words: 713; after pruning: 687


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.5 (1,1:292)  293  0.00 0.00 0.00  KSU002_B02_BE490281At01P006F02F081F1_013.ab1        1   293 (79)  C KSU003_B02_BE490281At01P006F02F081R1_013.ab1   (48)   293     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  148 nodes

 76 str. conn. components

Path
    1  C KSU003_B02_BE490281At01P006F02F081R1_013.ab1   341 
   88    KSU002_B02_BE490281At01P006F02F081F1_013.ab1    40 
   92  C KSU003_B02_BE490281At01P006F02F081R1_013.ab1   250 
  104    KSU002_B02_BE490281At01P006F02F081F1_013.ab1    56 
  112  C KSU003_B02_BE490281At01P006F02F081R1_013.ab1   230 
  128    KSU002_B02_BE490281At01P006F02F081F1_013.ab1    80 
  132  C KSU003_B02_BE490281At01P006F02F081R1_013.ab1   210 
  144    KSU002_B02_BE490281At01P006F02F081F1_013.ab1    96 
  160  C KSU003_B02_BE490281At01P006F02F081R1_013.ab1   182 
  164    KSU002_B02_BE490281At01P006F02F081F1_013.ab1   116 
  188  C KSU003_B02_BE490281At01P006F02F081R1_013.ab1   154 
  208    KSU002_B02_BE490281At01P006F02F081F1_013.ab1   160 
Contig length: old 420, new 420

Contig length: old 420, new 420
New start: 0