No. words: 1551; after pruning: 1511


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.9 (1,1:1387)  156  0.61 0.00 0.61  KSU008_B08_BE495653At01P009B03B091F1_061.ab1      698   860 (0)  C KSU009_B08_BE495653At01P009B03B091R1_061.ab1   (0)   691   530 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  76 nodes

 40 str. conn. components

Path
    1    KSU008_B08_BE495653At01P009B03B091F1_061.ab1     1 
  706  C KSU009_B08_BE495653At01P009B03B091R1_061.ab1   683 
  718    KSU008_B08_BE495653At01P009B03B091F1_061.ab1   718 
  726  C KSU009_B08_BE495653At01P009B03B091R1_061.ab1   663 
  730    KSU008_B08_BE495653At01P009B03B091F1_061.ab1   730 
  742  C KSU009_B08_BE495653At01P009B03B091R1_061.ab1   647 
Contig length: old 1388, new 1388

Contig length: old 1388, new 1388
New start: 0