No. words: 1639; after pruning: 1613


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.0 (1,1:1412)  226  0.00 0.00 0.00  KSU050_B03_BE495653Tu02P009B03B091F1_029.ab1      637   862 (0)  C KSU051_B03_BE495653Tu02P009B03B091R1_029.ab1   (0)   777   552 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  114 nodes

 59 str. conn. components

Path
    1    KSU050_B03_BE495653Tu02P009B03B091F1_029.ab1     1 
  672  C KSU051_B03_BE495653Tu02P009B03B091R1_029.ab1   742 
  692    KSU050_B03_BE495653Tu02P009B03B091F1_029.ab1   692 
  724  C KSU051_B03_BE495653Tu02P009B03B091R1_029.ab1   690 
  784    KSU050_B03_BE495653Tu02P009B03B091F1_029.ab1   784 
  788  C KSU051_B03_BE495653Tu02P009B03B091R1_029.ab1   626 
Contig length: old 1413, new 1413

Contig length: old 1413, new 1413
New start: 0