No. words: 1446; after pruning: 1420


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:668)  653  0.30 0.00 0.00  KSU004_A08_BE496999As02P006H02H081F1_053.ab1        1   669 (37)  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   (71)   669     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  332 nodes

 168 str. conn. components

Path
    1  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   740 
   79    KSU004_A08_BE496999As02P006H02H081F1_053.ab1     8 
   83  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   658 
   87    KSU004_A08_BE496999As02P006H02H081F1_053.ab1    16 
   91  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   650 
  106    KSU004_A08_BE496999As02P006H02H081F1_053.ab1    35 
  158  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   583 
  166    KSU004_A08_BE496999As02P006H02H081F1_053.ab1    95 
  270  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   471 
  274    KSU004_A08_BE496999As02P006H02H081F1_053.ab1   203 
  282  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   459 
  298    KSU004_A08_BE496999As02P006H02H081F1_053.ab1   227 
  354  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   387 
  366    KSU004_A08_BE496999As02P006H02H081F1_053.ab1   295 
  370  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   371 
  414    KSU004_A08_BE496999As02P006H02H081F1_053.ab1   343 
  418  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   323 
  422    KSU004_A08_BE496999As02P006H02H081F1_053.ab1   351 
  426  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   315 
  482    KSU004_A08_BE496999As02P006H02H081F1_053.ab1   411 
  490  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   251 
  502    KSU004_A08_BE496999As02P006H02H081F1_053.ab1   431 
  506  C KSU005_A08_BE496999As02P006H02H081R1_053.ab1   235 
  730    KSU004_A08_BE496999As02P006H02H081F1_053.ab1   659 
Contig length: old 777, new 777

Contig length: old 777, new 777
New start: 0