No. words: 1953; after pruning: 1927


Histogram of relative pair offsets, for read pairs with multiple alignments:
11     2
12     2
53     2
55     2
65     2
66     2
99     8

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 19.7 (1,1:928)  893  0.22 0.00 0.11  KSU047_C03_BE496999Ld03P006H02H081F1_027.ab1        1   929 (19)  C KSU048_C03_BE496999Ld03P006H02H081R1_027.ab1   (77)   928     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  460 nodes

 232 str. conn. components

Path
    1  C KSU048_C03_BE496999Ld03P006H02H081R1_027.ab1  1005 
   81    KSU047_C03_BE496999Ld03P006H02H081F1_027.ab1     4 
  678  C KSU048_C03_BE496999Ld03P006H02H081R1_027.ab1   328 
  738    KSU047_C03_BE496999Ld03P006H02H081F1_027.ab1   661 
  750  C KSU048_C03_BE496999Ld03P006H02H081R1_027.ab1   256 
  998    KSU047_C03_BE496999Ld03P006H02H081F1_027.ab1   922 
Contig length: old 1024, new 1024

Contig length: old 1024, new 1025
New start: 0 
I Change at: 991; seg lengths: entry 1, contig 0
S Change at: 1003; seg lengths: entry 1, contig 1