No. words: 538; after pruning: 512


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 0.3 (1,1:119)  106  0.00 0.85 0.85  KSU047_E03_BE496999Ld05P006H02H081F1_023.ab1        3   120 (139)  C KSU048_E03_BE496999Ld05P006H02H081R1_023.ab1   (161)   118     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  54 nodes

 29 str. conn. components

Path
    1  C KSU048_E03_BE496999Ld05P006H02H081R1_023.ab1   279 
  224    KSU047_E03_BE496999Ld05P006H02H081F1_023.ab1    64 
Contig length: old 418, new 419

Contig length: old 419, new 419
New start: 0