No. words: 1711; after pruning: 1671


Histogram of relative pair offsets, for read pairs with multiple alignments:
11     4
54     4
65     4
99     8

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.2 (1,1:934)  748  0.13 0.00 0.00  KSU047_F03_BE496999Ld06P006H02H081F1_021.ab1       60   835 (0)  C KSU048_F03_BE496999Ld06P006H02H081R1_021.ab1   (0)   876   101 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1    KSU047_F03_BE496999Ld06P006H02H081F1_021.ab1     1 
  619  C KSU048_F03_BE496999Ld06P006H02H081R1_021.ab1   317 
Contig length: old 935, new 935

Contig length: old 935, new 935
New start: 0