No. words: 539; after pruning: 513


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -1.1 -1.1 (1,1:104)   89  0.00 1.96 0.00  KSU047_A04_BE496999Ld09P006H02H081F1_032.ab1        3   104 (158)  C KSU048_A04_BE496999Ld09P006H02H081R1_032.ab1   (173)   104     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.1       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  44 nodes

 24 str. conn. components

Path
    1  C KSU048_A04_BE496999Ld09P006H02H081R1_032.ab1   277 
  235    KSU047_A04_BE496999Ld09P006H02H081F1_032.ab1    62 
Contig length: old 434, new 435

Contig length: old 435, new 435
New start: 0