No. words: 548; after pruning: 522


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.2 -0.2 (1,1:117)  100  0.00 1.71 0.85  KSU047_D04_BE496999Ld12P006H02H081F1_026.ab1        2   118 (151)  C KSU048_D04_BE496999Ld12P006H02H081R1_026.ab1   (161)   118     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  50 nodes

 27 str. conn. components

Path
    1  C KSU048_D04_BE496999Ld12P006H02H081R1_026.ab1   279 
  225    KSU047_D04_BE496999Ld12P006H02H081F1_026.ab1    63 
Contig length: old 430, new 431

Contig length: old 431, new 431
New start: 0