No. words: 530; after pruning: 504


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    4   -1.2 -1.2 (1,1:110)   94  0.00 0.93 0.93  KSU047_G04_BE496999Ld15P006H02H081F1_020.ab1        5   111 (168)  C KSU048_G04_BE496999Ld15P006H02H081R1_020.ab1   (144)   107     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.2       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  48 nodes

 26 str. conn. components

Path
    1  C KSU048_G04_BE496999Ld15P006H02H081R1_020.ab1   251 
  195    KSU047_G04_BE496999Ld15P006H02H081F1_020.ab1    54 
Contig length: old 419, new 420

Contig length: old 420, new 420
New start: 0