No. words: 537; after pruning: 511


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.4 -0.4 (1,1:116)  100  0.00 1.72 0.86  KSU047_H04_BE496999Ld16P006H02H081F1_018.ab1        2   117 (140)  C KSU048_H04_BE496999Ld16P006H02H081R1_018.ab1   (163)   117     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.4       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  50 nodes

 27 str. conn. components

Path
    1  C KSU048_H04_BE496999Ld16P006H02H081R1_018.ab1   280 
  241    KSU047_H04_BE496999Ld16P006H02H081F1_018.ab1    77 
Contig length: old 420, new 421

Contig length: old 421, new 421
New start: 0