No. words: 1892; after pruning: 1840


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:318)  307  0.00 0.31 0.31  KSU045_H09_BE497108Ld04P006A03A091F2_065.ab1        1   319 (138)  C KSU048_D05_BE497108Ld04P006A03A091R1_041.ab1   (168)   319     1 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (2,1:318)  481  0.00 0.00 0.21  KSU048_D05_BE497108Ld04P006A03A091R1_041.ab1        1   487 (0)    KSU046_H09_BE497108Ld04P006A03A091R2_065.ab1        2   487 (1) *
Merge:(0)    0    0.0 10.1 (3,1:-1)  456  0.00 0.00 0.00  KSU045_H09_BE497108Ld04P006A03A091F2_065.ab1        1   457 (0)    KSU047_D05_BE497108Ld04P006A03A091F1_041.ab1        2   458 (2) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1072 nodes

 321 str. conn. components

Path
    1  C KSU046_H09_BE497108Ld04P006A03A091R2_065.ab1   488 
   23  C KSU048_D05_BE497108Ld04P006A03A091R1_041.ab1   466 
  283  C KSU046_H09_BE497108Ld04P006A03A091R2_065.ab1   206 
  298    KSU047_D05_BE497108Ld04P006A03A091F1_041.ab1   129 
  301  C KSU048_D05_BE497108Ld04P006A03A091R1_041.ab1   188 
  325    KSU045_H09_BE497108Ld04P006A03A091F2_065.ab1   155 
  329  C KSU046_H09_BE497108Ld04P006A03A091R2_065.ab1   160 
  373    KSU045_H09_BE497108Ld04P006A03A091F2_065.ab1   203 
  394    KSU047_D05_BE497108Ld04P006A03A091F1_041.ab1   225 
  602    KSU045_H09_BE497108Ld04P006A03A091F2_065.ab1   432 
  622    KSU047_D05_BE497108Ld04P006A03A091F1_041.ab1   453 
Contig length: old 628, new 629

Contig length: old 629, new 629
New start: 0