No. words: 1138; after pruning: 1112


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.9 (1,1:313)  272  3.18 0.32 0.32  KSU047_G06_BE497108Ld15P006A03A091F1_036.ab1        1   314 (339)  C KSU048_G06_BE497108Ld15P006A03A091R1_036.ab1   (171)   314     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  128 nodes

 66 str. conn. components

Path
    1  C KSU048_G06_BE497108Ld15P006A03A091R1_036.ab1   485 
  204    KSU047_G06_BE497108Ld15P006A03A091F1_036.ab1    32 
  248  C KSU048_G06_BE497108Ld15P006A03A091R1_036.ab1   238 
  252    KSU047_G06_BE497108Ld15P006A03A091F1_036.ab1    80 
  365  C KSU048_G06_BE497108Ld15P006A03A091R1_036.ab1   121 
  369    KSU047_G06_BE497108Ld15P006A03A091F1_036.ab1   197 
Contig length: old 824, new 825

Contig length: old 825, new 825
New start: 0 
S Change at: 192; seg lengths: entry 1, contig 1