No. words: 1125; after pruning: 1099


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:552)  539  0.00 0.18 0.18  KSU004_D08_BE497160As02P006C03C091F1_062.ab1        1   553 (10)  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   (9)   553     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   562 
  101    KSU004_D08_BE497160As02P006C03C091F1_062.ab1    91 
  105  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   458 
  113    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   103 
  121  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   442 
  129    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   119 
  149  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   414 
  161    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   151 
  181  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   382 
  185    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   175 
  189  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   374 
  197    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   187 
  201  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   362 
  229    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   219 
  245  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   318 
  253    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   243 
  285  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   278 
  301    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   291 
  325  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   238 
  333    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   323 
  381  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1   182 
  385    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   375 
  473  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1    90 
  481    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   471 
  485  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1    78 
  489    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   479 
  493  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1    70 
  501    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   491 
  537  C KSU005_D08_BE497160As02P006C03C091R1_062.ab1    26 
  545    KSU004_D08_BE497160As02P006C03C091F1_062.ab1   535 
Contig length: old 572, new 573

Contig length: old 573, new 573
New start: 0