No. words: 1443; after pruning: 1417


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.5 -3.5 (1,1:967)  328  9.47 0.00 0.00  KSU050_C09_BE497224As02P009C03C091F1_075.ab1      250   724 (0)  C KSU051_C09_BE497224As02P009C03C091R1_075.ab1   (0)   719   245 *
  Worst pair: offset 0 
LLR breakdown: discreps: -13.1 (<20 part: -13.1 (#=45), >20:0.0 (#=0); in HQ: -13.1, out HQ 0.0), match: 9.6  total: -3.5  328  9.47 0.00 0.00  KSU050_C09_BE497224As02P009C03C091F1_075.ab1      250   724 (0)  C KSU051_C09_BE497224As02P009C03C091R1_075.ab1   (0)   719   245 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.5       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  128 nodes

 66 str. conn. components

Path
    1    KSU050_C09_BE497224As02P009C03C091F1_075.ab1     1 
  422  C KSU051_C09_BE497224As02P009C03C091R1_075.ab1   547 
Contig length: old 968, new 968

Contig length: old 968, new 968
New start: 0